Personally, I came to love on the show.
Me too. I see its flaws, and I love it anyway. I would never declare I hate anything about it, except for maybe *the_abomination* but that's a special case. Even if I hate a specific episode or aspect, I recognize that some of my fellow fans may see an episode or moment differently. Who am I to sneer at them and make myself superior? What's the point of that? That's why I was so gratified to see io9 writing so thoughtfully and, imo, correctly about how good the show was. It's the bastard stepchild of trek - it it's underrated and takes too much abuse from idiots. Defending it and seeing it defended is a pleasure.
Getting back to Twilight - and Alelou's original question. I again wonder how remembering might have affected Archer, who was already hanging by an emotional thread in season three. I said earlier that I thought it might make Archer crack up more and become timid, but on the other hand, it might make him more focused - give him - I've seen the worst case - now moving forward attitude. That would have been harder for the writers to carry off, but it's possible.
What's interesting is that E2, which you think would have informed the whole crew's actions a lot more, was rarely, if ever mentioned again. I expected Lorian to be name checked at least in Home and Demons/Terra Prime. Or referenced in some way. I get they wouldn't want to confuse people who hadn't see that episode, but they could have done it in a way that didn't do that.